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CoNIFER

Easily calculate the number of sequencing reads
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5.0
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  • Currently 5.00/5
Listed version:
0.2.1 Beta
License:
Freeware
/ Free / Free download
Price:
Free
Operating system:
Windows
File size:
30.72 kB
Downloads:
1,137
Last updated:
30.07.2012 | NEW
Publisher:
Category:
Other / Science / CAD
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CoNIFER is listed in Science / CAD category and made available by Niklas Krumm for Windows. Unfortunately, we have not yet reviewed CoNIFER. If you would like to submit a review of this software, we encourage you to submit us something!
CoNIFER review by publisher Niklas Krumm:

What is CoNIFER software from Niklas Krumm, what is it used for and how to use it?

Easily calculate the number of sequencing reads

CoNIFER, also knows as Copy Number Inference From Exome Reads is a Python-based tool that uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes. As exome capture reactions are subject to strong and systematic capture biases between sample batches, we implemented singular value decomposition (SVD) to eliminate these biases in exome data. CoNIFER offers the ability to mix exome sequence from multiple experimental runs by eliminating batch biases. Together with a short read aligner such as mrsFAST which can align reads to multiple locations, CoNIFER can robustly detect rare CNVs and estimate the copy number of duplicated genes up to ~8 copies with current exome capture kits.

Download and install CoNIFER safely and without concerns.

CoNIFER is a software product developed by Niklas Krumm and it is listed in Other category under Science / CAD. CoNIFER is a free software product and it is fully functional for an unlimited time although there may be other versions of this software product. You can run CoNIFER on all modern Windows OS operating systems. CoNIFER was last time updated on 30.07.2012 and it has 1,137 downloads on Download.hr portal. Download and install CoNIFER safely and without concerns.
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